[1]
|
Gubala, V., Harris, L.F., Ricco, A.J., Tan, M.X. and Williams, D.E. (2011) Point of Care Diagnostics: Status and Future. Analytical Chemistry, 84, 487-515. https://doi.org/10.1021/ac2030199
|
[2]
|
Kelley, S.O. (2016) What Are Clinically Relevant Levels of Cellular and Biomolecular Analytes? ACS Sensors, 2, 193-197. https://doi.org/10.1021/acssensors.6b00691
|
[3]
|
Wu, Y.F., Tilley, R.D. and Gooding, J.J. (2018) Challenges and Solutions in Developing Ultrasensitive Biosensors. Journal of the American Chemical Society, 141, 1162-1170. https://doi.org/10.1021/jacs.8b09397
|
[4]
|
Singh, P.S. and Lemay, S.G. (2016) Stochastic Processes in Electrochemistry. Analytical Chemistry, 88, 5017-5027.
https://doi.org/10.1021/acs.analchem.6b00683
|
[5]
|
Bizzarri, A.R. and Cannistraro, S. (2013) 1/f(alpha) Noise in the Dynamic Force Spectroscopy Curves Signals the Occurrence of Biorecognition. Physical Review Letters, 110, Article ID: 048104.
https://doi.org/10.1103/PhysRevLett.110.048104
|
[6]
|
Bizzarri, A.R. and Cannistraro, S. (2014) Antigen-Antibody Biorecognition Events as Discriminated by Noise Analysis of Force Spectroscopy Curves. Nanotechnology, 25, Article ID: 335102.
https://doi.org/10.1088/0957-4484/25/33/335102
|
[7]
|
Bizzarri, A.R. (2016) Energy Landscape Investigation by Wavelet Transform Analysis of Atomic Force Spectroscopy Data in a Biorecognition Experiment. Journal of Biological Physics, 42, 167-176.
https://doi.org/10.1007/s10867-015-9398-8
|
[8]
|
Bizzarri, A.R., Vegh, A.G., Varo, G. and Cannistraro, S. (2019) Interaction Force Fluctuations in Antigen-Antibody Biorecognition Studied by Atomic Force Spectroscopy. ACS Omega, 4, 3627-3634.
https://doi.org/10.1021/acsomega.8b02993
|
[9]
|
Kasas, S., Malovichko, A., Villalba, M.I., Vela, M.E., Yantorno, O. and Willaert, R.G. (2021) Nanomotion Detection-Based Rapid Antibiotic Susceptibility Testing. Antibiotics, 10, Article No. 287.
https://doi.org/10.3390/antibiotics10030287
|
[10]
|
Kasas, S., Ruggeri, F.S., Benadiba, C., Maillard, C., Stupar, P., Tournu, H., Dietler, G. and Longo, G. (2015) Detecting Nanoscale Vibrations as Signature of Life. Proceedings of the National Academy of Sciences of the United States of America, 112, 378-381. https://doi.org/10.1073/pnas.1415348112
|
[11]
|
Willaert, R.G., Vanden Boer, P., Malovichko, A., Alioscha-Perez, M., Radotic, K., Bartolic, D., Kalauzi, A., Villalba, M.I., Sanglard, D., Dietler, G., Sahli, H. and Kasas, S. (2020) Single Yeast Cell Nanomotions Correlate with Cellular Activity. Science Advances, 6, 1-8. https://doi.org/10.1126/sciadv.aba3139
|
[12]
|
Shabi, O., Natan, S., Kolel, A., Mukherjee, A., Tchaicheeyan, O., Wolfenson, H., Kiryati, N. and Lesman, A. (2020) Motion Magnification Analysis of Microscopy Videos of Biological Cells. PLoS ONE, 15, Article ID: e0240127.
https://doi.org/10.1371/journal.pone.0240127
|
[13]
|
Kwon, T., Gunasekaran, S. and Eom, K. (2019) Atomic Force Microscopy-Based Cancer Diagnosis by Detecting Cancer-specific Biomolecules and Cells. Biochimica et Biophysica Acta—Reviews on Cancer, 1871, 367-378.
https://doi.org/10.1016/j.bbcan.2019.03.002
|
[14]
|
Ruggeri, F.S., Sneideris, T., Vendruscolo, M. and Knowles, T.P.J. (2019) Atomic Force Microscopy for Single Molecule Characterisation of Protein Aggregation. Archives of Biochemistry and Biophysics, 664, 134-148.
https://doi.org/10.1016/j.abb.2019.02.001
|
[15]
|
Valotteau, C., Sumbul, F. and Rico, F. (2019) High-Speed Force Spectroscopy: Microsecond Force Measurements Using Ultrashort Cantilevers. Biophysical Reviews, 11, 689-699. https://doi.org/10.1007/s12551-019-00585-4
|
[16]
|
Lissandrello, C., Inci, F., Francom, M., Paul, M.R., Demirci, U. and Ekinci, K.L. (2014) Nanomechanical Motion of Escherichia coli Adhered to a Surface. Applied Physics Letters, 105, Article ID: 113701.
https://doi.org/10.1063/1.4895132
|
[17]
|
Yu, H., Siewny, M.G.W., Edwards, D.T., Sanders, A.W. and Perkins, T.T. (2017) Hidden Dynamics in the Unfolding of Individual Bacteriorhodopsin Proteins. Science, 355, 945-950. https://doi.org/10.1126/science.aah7124
|
[18]
|
Beaussart, A. and El-Kirat-Chatel, S. (2019) Microbial Adhesion and Ultrastructure from the Single-Molecule to the Single-Cell Levels by Atomic Force Microscopy. The Cell Surface, 5, Article ID: 100031.
https://doi.org/10.1016/j.tcsw.2019.100031
|
[19]
|
Newton, R., Delguste, M., Koehler, M., Dumitru, A.C., Laskowski, P.R., Mueller, D.J. and Alsteens, D. (2017) Combining Confocal and Atomic Force Microscopy to Quantify Single-Virus Binding to Mammalian Cell Surfaces. Nature Protocols, 12, 2275-2292. https://doi.org/10.1038/nprot.2017.112
|
[20]
|
Ghosh, H. and Roy Chaudhuri, C. (2013) Ultrasensitive Food Toxin Biosensor Using Frequency Based Signals of Silicon Oxide Nanoporous Structure. Applied Physics Letters, 102, Article ID: 243701.
https://doi.org/10.1063/1.4811409
|
[21]
|
Ghosh, H. and Roy Chaudhuri, C. (2015) Noise Spectroscopy as An Efficient Tool for Impedance Based Sub-Femtomolar Toxin Detection in Complex Mixture Using Nanoporous Silicon Oxide. Biosensors and Bioelectronics, 67, 757-762. https://doi.org/10.1016/j.bios.2014.09.035
|
[22]
|
Rivnay, J., Leleux, P., Hama, A., Ramuz, M., Huerta, M., Malliaras, G.G. and Owens, R.M. (2015) Using White Noise to Gate Organic Transistors for Dynamic Monitoring of Cultured Cell Layers. Scientific Reports, 5, Article ID: 11613.
https://doi.org/10.1038/srep11613
|
[23]
|
Kulkarni, G.S. and Zhong, Z. (2012) Detection Beyond the Debye Screening Length in a High-Frequency Nanoelectronic Biosensor. Nano Letters, 12, 719-723. https://doi.org/10.1021/nl203666a
|
[24]
|
Laborde, C., Pittino, F., Verhoeven, H.A., Lemay, S.G., Selmi, L., Jongsma, M.A. and Widdershoven, F.P. (2015) Real-Time Imaging of Microparticles and Living Cells with CMOS Nanocapacitor Arrays. Nature Nanotechnology, 10, 791-795. https://doi.org/10.1038/nnano.2015.163
|
[25]
|
Cossettini, A., Laborde, C., Brandalise, D., Widdershoven, F., Lemay, S.G. and Selmi, L. (2021) Space and Frequency Dependence of Nanocapacitor Array Sensors Response to Microparticles in Electrolyte. IEEE Sensors Journal, 21, 4696-4704. https://doi.org/10.1109/JSEN.2020.3032712
|
[26]
|
Zheng, G., Gao, X.P.A. and Lieber, C.M. (2010) Frequency Domain Detection of Biomolecules Using Silicon Nanowire Biosensors. Nano Letters, 10, 3179-3183. https://doi.org/10.1021/nl1020975
|
[27]
|
Setiadi, A., Fujii, H., Kasai, S., Yamashita, K.-I., Ogawa, T., Ikuta, T., Kanai, Y., Matsumoto, K., Kuwahara, Y. and Akai-Kasaya, M. (2017) Room-Temperature Discrete-Charge-Fluctuation Dynamics of a Single Molecule Adsorbed on a Carbon Nanotube. Nanoscale, 9, Article ID: 10674-10683. https://doi.org/10.1039/C7NR02534C
|
[28]
|
Vasudevan, S. and Ghosh, A.W. (2014) Using Room Temperature Current Noise to Characterize Single Molecular Spectra. ACS Nano, 8, 2111-2117. https://doi.org/10.1021/nn404526w
|
[29]
|
Mathwig, K., Mampallil, D., Kang, S. and Lemay, S.G. (2012) Electrical Cross-Correlation Spectroscopy: Measuring Picoliter-per-Minute Flows in Nanochannels. Physical Review Letters, 109, Article ID: 118302.
https://doi.org/10.1103/PhysRevLett.109.118302
|
[30]
|
Zevenbergen, M.A.G., Singh, P.S., Goluch, E.D., Wolfrum, B.L. and Lemay, S.G. (2009) Electrochemical Correlation Spectroscopy in Nanofluidic Cavities. Analytical Chemistry, 81, 8203-8212. https://doi.org/10.1021/ac9014885
|
[31]
|
Zevenbergen, M.A.G., Singh, P.S., Goluch, E.D., Wolfrum, B.L. and Lemay, S.G. (2011) Stochastic Sensing of Single Molecules in a Nanofluidic Electrochemical Device. Nano Letters, 11, 2881-2886. https://doi.org/10.1021/nl2013423
|
[32]
|
Kaetelhoen, E., Krause, K.J., Singh, P.S., Lemay, S.G. and Wolfrum, B. (2013) Noise Characteristics of Nanoscaled Redox-Cycling Sensors: Investigations Based on Random Walks. Journal of the American Chemical Society, 135, 8874-8881. https://doi.org/10.1021/ja3121313
|
[33]
|
Singh, P.S., Chan, H.-S.M., Kang, S. and Lemay, S.G. (2011) Stochastic Amperometric Fluctuations as a Probe for Dynamic Adsorption in Nanofluidic Electrochemical Systems. Journal of the American Chemical Society, 133, Article ID: 18289-18295. https://doi.org/10.1021/ja2067669
|
[34]
|
Hoogerheide, D.P., Garaj, S. and Golovchenko, J.A. (2009) Probing Surface Charge Fluctuations with Solid-State Nanopores. Physical Review Letters, 102, Article ID: 256804. https://doi.org/10.1103/PhysRevLett.102.256804
|
[35]
|
Powell, M.R., Sa, N., Davenport, M., Healy, K., Vassiouk, I., Letant, S.E., Baker, L.A. and Siwy, Z.S. (2011) Noise Properties of Rectifying Nanopores.The Journal of Physical Chemistry C, 115, 8775-8783.
https://doi.org/10.1021/jp2016038
|
[36]
|
Bezrukov, S.M. and Kasianowicz, J.J. (1993) Current Noise Reveals Protonation Kinetics and Number of Ionizable Sites in an Open Protein Ion Channel. Physical Review Letters, 70, 2352-2355.
https://doi.org/10.1103/PhysRevLett.70.2352
|
[37]
|
Nekolla, S., Andersen, C. and Benz, R. (1994) Noise Analysis of Ion Current through the Open and the Sugar-induced Closed State of the LamB Channel of Escherichia Coli Outer Membrane: Evaluation of the Sugar Binding Kinetics to the Channel Interior. Biophysical Journal, 66, 1388-1397. https://doi.org/10.1016/S0006-3495(94)80929-4
|
[38]
|
Nestorovich, E.M., Danelon, C., Winterhalter, M. and Bezrukov, S.M. (2002) Designed to Penetrate: Time-resolved Interaction of Single Antibiotic Molecules with Bacterial Pores. Proceedings of the National Academy of Sciences of the United States of America, 99, 9789-9794. https://doi.org/10.1073/pnas.152206799
|
[39]
|
Queralt-Martin, M., Lidon Lopez, M. and Alcaraz, A. (2015) Excess White Noise to Probe Transport Mechanisms in a Membrane Channel. Physical Review E, 91, Article ID: 062704. https://doi.org/10.1103/PhysRevE.91.062704
|
[40]
|
Zorkot, M., Golestanian, R. and Bonthuis, D.J. (2016) The Power Spectrum of Ionic Nanopore Currents: The Role of Ion Correlations. Nano Letters, 16, 2205-2212. https://doi.org/10.1021/acs.nanolett.5b04372
|
[41]
|
Zorkot, M., Golestanian, R. and Bonthuis, D.J. (2016) Current Fluctuations in Nanopores: The Effects of Electrostatic and Hydrodynamic Interactions. The European Physical Journal Special Topics, 225, 1583-1594.
https://doi.org/10.1140/epjst/e2016-60152-y
|
[42]
|
Fragasso, A., Pud, S. and Dekker, C. (2019) 1/f Noise in Solid-State Nanopores Is Governed by Access and Surface Regions. Nanotechnology, 30, Article ID: 395202. https://doi.org/10.1088/1361-6528/ab2d35
|
[43]
|
Gravelle, S., Netz, R.R. and Bocquet, L. (2019) Adsorption Kinetics in Open Nanopores as a Source of Low-Frequency Noise. Nano Letters, 19, 7265-7272. https://doi.org/10.1021/acs.nanolett.9b02858
|
[44]
|
Rigo, E., Dong, Z., Park, J.H., Kennedy, E., Hokmabadi, M., Almonte-Garcia, L., Ding, L., Aluru, N. and Timp, G. (2019) Measurements of the Size and Correlations Between Ions Using an Electrolytic Point Contact. Nature Communications, 10, Article No. 2382. https://doi.org/10.1038/s41467-019-10265-2
|
[45]
|
Yusko, E.C., Johnson, J.M., Majd, S., Prangkio, P., Rollings, R.C., Li, J., Yang, J. and Mayer, M. (2011) Controlling Protein Translocation through Nanopores with Bio-Inspired Fluid Walls. Nature Nanotechnology, 6, 253-260.
https://doi.org/10.1038/nnano.2011.12
|
[46]
|
Yusko, E.C., Bruhn, B.R., Eggenberger, O.M., Houghtaling, J., Rollings, R.C., Walsh, N.C., Nandivada, S., Pindrus, M., Hall, A.R., Sept, D., Li, J., Kalonia, D.S. and Mayer, M. (2017) Real-Time Shape Approximation and Fingerprinting of Single Proteins Using a Nanopore. Nature Nanotechnology, 12, 360-367.
https://doi.org/10.1038/nnano.2016.267
|
[47]
|
Fologea, D., Ledden, B., McNabb, D.S. and Li, J. (2007) Electrical Characterization of Protein Molecules by a Solid-State Nanopore. Applied Physics Letters, 91, Article ID: 053901. https://doi.org/10.1063/1.2767206
|
[48]
|
Robertson, J.W.F., Rodrigues, C.G., Stanford, V.M., Rubinson, K.A., Krasilnikov, O.V. and Kasianowicz, J.J. (2007) Single-Molecule Mass Spectrometry in Solution Using a Solitary Nanopore. Proceedings of the National Academy of Sciences of the United States of America, 104, 8207-8211. https://doi.org/10.1073/pnas.0611085104
|
[49]
|
Raillon, C., Cousin, P., Traversi, F., Garcia-Cordero, E., Hernandez, N. and Radenovic, A. (2012) Nanopore Detection of Single Molecule RNAP-DNA Transcription Complex. Nano Letters, 12, 1157-1164.
https://doi.org/10.1021/nl3002827
|
[50]
|
Soni, G.V. and Dekker, C. (2012) Detection of Nucleosomal Substructures Using Solid-State Nanopores. Nano Letters, 12, 3180-3186. https://doi.org/10.1021/nl301163m
|
[51]
|
Di Fiori, N., Squires, A., Bar, D.; Gilboa, T., Moustakas, T.D. and Meller, A. (2013) Optoelectronic Control of Surface Charge and Translocation Dynamics in Solid-State Nanopores. Nature Nanotechnology, 8, 946-951.
https://doi.org/10.1038/nnano.2013.221
|
[52]
|
Yusko, E.C., Prangkio, P., Sept, D., Rollings, R.C., Li, J. and Mayer, M. Single-Particle Characterization of a Beta Oligomers in Solution. ACS Nano, 6, 5909-5919. https://doi.org/10.1021/nn300542q
|
[53]
|
Houghtaling, J., Ying, C., Eggenberger, O.M., Fennouri, A., Nandivada, S., Acharjee, M., Li, J., Hall, A.R. and Mayer, M. (2019) Estimation of Shape, Volume, and Dipole Moment of Individual Proteins Freely Transiting a Synthetic Nanopore. ACS Nano, 13, 5231-5242. https://doi.org/10.1021/acsnano.8b09555
|
[54]
|
German, S.R., Hurd, T.S., White, H.S. and Mega, T.L. (2015) Sizing Individual Au Nanoparticles in Solution with Sub-Nanometer Resolution. ACS Nano, 9, 7186-7194. https://doi.org/10.1021/acsnano.5b01963
|
[55]
|
Boskovic, F., Zhu, J., Chen, K. and Keyser, U.F. (2019) Monitoring G-Quadruplex Formation with DNA Carriers and Solid-State Nanopores. Nano Letters, 19, 7996-8001. https://doi.org/10.1021/acs.nanolett.9b03184
|
[56]
|
Li, X., Lee, K.H., Shorkey, S., Chen, J. and Chen, M. (2020) Different Anomeric Sugar Bound States of Maltose Binding Protein Resolved by a Cytolysin a Nanopore Tweezer. ACS Nano, 14, 1727-1737.
https://doi.org/10.1021/acsnano.9b07385
|
[57]
|
Liu, S.C., Li, M.X., Li, M.Y., Wang, Y.Q., Ying, Y.L., Wan, Y.J. and Long, Y.T. (2018) Measuring a Frequency Spectrum for Single-Molecule Interactions with a Confined Nanopore. Faraday Discussions, 210, 87-99.
https://doi.org/10.1039/C8FD00023A
|
[58]
|
Zhu, H., Ma, G., Wan, Z., Wang, H. and Tao, N. (2020) Detection of Molecules and Charges with a Bright Field Optical Microscope. Analytical Chemistry, 92, 5904-5909. https://doi.org/10.1021/acs.analchem.9b05750
|
[59]
|
Ma, G., Shan, X., Wang, S. and Tao, N. (2019) Quantifying Ligand-Protein Binding Kinetics with Self-Assembled Nano-Oscillators. Analytical Chemistry, 91, Article ID: 14149-14156. https://doi.org/10.1021/acs.analchem.9b04195
|
[60]
|
Wang, H., Tang, Z., Wang, Y., Ma, G. and Tao, N. (2019) Probing Single Molecule Binding and Free Energy Profile with Plasmonic Imaging of Nanoparticles. Journal of the American Chemical Society, 141, Article ID: 16071-16078.
https://doi.org/10.1021/jacs.9b08405
|
[61]
|
Guerra, L.F., Muir, T.W. and Yang, H. (2019) Single-Particle Dynamic Light Scattering: Shapes of Individual Nanoparticles. Nano Letters, 19, 5530-5536. https://doi.org/10.1021/acs.nanolett.9b02066
|
[62]
|
Gutierrez-Portocarrero, S., Sauer, K., Karunathilake, N., Subedi, P. and Alpuche-Aviles, M.A. (2020) Digital Processing for Single Nanoparticle Electrochemical Transient Measurements. Analytical Chemistry, 92, 8704-8714.
https://doi.org/10.1021/acs.analchem.9b05238
|
[63]
|
Gu, Z., Ying, Y.L., Cao, C., He, P. and Long, Y.T. (2019) Accurate Data Process for Nanopore Analysis. Analytical Chemistry, 87, 907-913. https://doi.org/10.1021/ac5028758
|
[64]
|
Liu, X., Zeng, Q., Liu, C. and Wang, L. (2020) A Fourier Transform-Induced Data Process for Label-Free Selective Nanopore Analysis Under Sinusoidal Voltage Excitations. Analytical Chemistry, 92, Article ID: 11635-11643.
https://doi.org/10.1021/acs.analchem.0c01339
|
[65]
|
Cho, S.Y., Lee, Y., Lee, S., Kang, H., Kim, J., Choi, J., Ryu, J., Joo, H., Jung, H.T. and Kim, J. (2020) Finding Hidden Signals in Chemical Sensors Using Deep Learning. Analytical Chemistry, 92, 6529-6537.
https://doi.org/10.1021/acs.analchem.0c00137
|
[66]
|
Wei, Z.X., Ying, Y.L., Li, M.Y., Yang, J., Zhou, J.L., Wang, H.F., Yang, B.Y. and Long, Y.T. (2019) Learning Shapelets for Improving Single-Molecule Nanopore Sensing. Analytical Chemistry, 91, Article ID: 10033-10039.
https://doi.org/10.1021/acs.analchem.9b01896
|
[67]
|
Arima, A., Harlisa, I.H., Yoshida, T., Tsutsui, M., Tanaka, M., Yokota, K., Tonomura, W., Yasuda, J., Taniguchi, M., Washio, T., Okochi, M. and Kawai, T. (2018) Identifying Single Viruses Using Biorecognition Solid-State Nanopores. Journal of the American Chemical Society, 140, Article ID: 16834-16841. https://doi.org/10.1021/jacs.8b10854
|
[68]
|
Arima, A., Tsutsui, M., Harlisa, I.H., Yoshida, T., Tanaka, M., Yokota, K., Tonomura, W., Taniguchi, M., Okochi, M., Washio, T. and Kawai, T. (2018) Selective Detections of Single-viruses Using Solid-state Nanopores. Scientific Reports, 8, Article No. 16305. https://doi.org/10.1038/s41598-018-34665-4
|
[69]
|
Arima, A., Tsutsui, M., Yoshida, T., Tatematsu, K., Yamazaki, T., Yokota, K., Kuroda, S.I., Washio, T., Baba, Y. and Kawai, T. (2020) Digital Pathology Platform for Respiratory Tract Infection Diagnosis via Multiplex Single-Particle Detections. ACS Sensors, 5, 3398-3403. https://doi.org/10.1021/acssensors.0c01564
|
[70]
|
Alessio, F., Sonja, S. and Cees, D. (2020) Comparing Current Noise in Biological and Solid-State Nanopores. ACS Nano, 14, 1338-1349. https://doi.org/10.1021/acsnano.9b09353
|